NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307517_10063953

Scaffold Ga0307517_10063953


Overview

Basic Information
Taxon OID3300028786 Open in IMG/M
Scaffold IDGa0307517_10063953 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3429
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)48.4473Long. (o)-122.323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093012Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307517_100639531F093012N/AVSRSGTHSLLYEAQSPCYSHEYGPQIDRIYEKLTAAFERADPFTNEIDSALEAMGLIDPLCENGIAEKSYQLFHVAMGTPVSLAYSPEKKWEASRLTMRGAYKWDKSLPQVEDPQDILMFLGHHFDLATRCDQNQDEPIQNALCALAYASGPVTIEALKRFDPTDPSFVRGICYVFQDDKPFELRKAALFFLPLISDKWFNTPHPIMEPDQMGSLCVDWASAVDGIELTKDVQKAALTVFFGMINSSHWRPHVVREKWRLLEHFPSVPDDSLPLRRCIDNPELTDTIVKMENPAAMILWLAILWLKYKELTPQVLEQLETITKEVAQGERKTDLDVYLSVMDSYLRQAEDALMQYDMWSTDPAAIALRTKIDNLQQARTSLVALKEG
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