NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302232_10116850

Scaffold Ga0302232_10116850


Overview

Basic Information
Taxon OID3300028789 Open in IMG/M
Scaffold IDGa0302232_10116850 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1358
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006669Metagenome / Metatranscriptome367Y
F026986Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0302232_101168501F006669GAGGVAMVDHPERSRAPFTQLEMRGMWTYGDGALTVRAYRAAADTAGAGAGVAAGSWVLVDQATGTVAGVVAPGEFSRRFRPVDVFADVPGLPGYLGTVTAPDGAALVDLVLDRNPFM
Ga0302232_101168503F026986GGAGGMRKLKLYYGTVKSSANRQHFMAWANSREHALDLVEAALTATEPVLGSVVGPIASLPADVMQPGVFVEVMPG

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