Scaffold Ga0307504_10019431

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307504_10019431

Scaffold Ga0307504_10019431

Overview

Basic Information
Taxon OID	3300028792 Open in IMG/M
Scaffold ID	Ga0307504_10019431 Open in IMG/M
Source Dataset Name	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1668
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	47.5302	Long. (^o)	-121.825	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000780	Metagenome / Metatranscriptome	895	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307504_100194312	F000780	GAG	MDRPIEEPVAPSDGKGAYRSGHLMCRSTPWGIMGFLACSYFAWISFSHAIRGEYDWPHDAWTAATYIVWILVLVGLVLDTRCLRERVFFGVLVANFVAGLGLTLWSTIPSAQVHNARIGTGALWSLAALASLTTVGRAKAVGTEE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.