NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10000460

Scaffold Ga0307515_10000460


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10000460 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97404
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (43.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008531Metagenome332Y
F036505Metagenome169Y
F038958Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000046016F036505N/AMANEIELALSVFMGNLGVKGRTKYWETHECDQQFEDNESICLGMSQRLRKEGNATLNKVSARRPGLAEIIEKVHISRHFESRKTDCHIAENACDIDYADTKSSKRVH
Ga0307515_1000046046F038958N/AMLMTDVIAYLFVDVHLSQAKLTLFLDRNCFSIASNVSLYSLQEMLLNVVADGNTNSLYNALYEYHRSWFDIAFRGIXAYTNPNMT
Ga0307515_1000046051F008531AGGAMAHIIQLALSAFLGSLGVKGRTKSWEAHERDQQFGENESTDTGKRQRLRKEGNARINKVSAMKPGLVMIIETVRIS
Ga0307515_1000046053F038958N/AMTEVMASLFVEVHPSKAKQTLFRNGNYFLIASTVSAYSLRQMLIWVVADGRTRSACNALYDSRNSGFDVAFQGMGAETNPNMR
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