NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10001034

Scaffold Ga0307515_10001034


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10001034 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63620
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (70.59%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F015182Metagenome256Y
F038927Metagenome / Metatranscriptome164Y
F054477Metagenome139Y
F071034Metagenome122Y
F088008Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000103422F071034AGGAGLRYFTTLVAVPAINISFCLRIFCLFSSFFIVKTIEPNLVYRSCLFILDEIYLGSPCILIGLKVLISSFRSLEPPSPKKGRVGTLWAII
Ga0307515_1000103423F088008GAGVLLQLIIKGSFSCNVITLNSLLIKIASFAVYNRANSLASVLNVITVPCLFAL
Ga0307515_1000103427F000247AGGVHTYIIYITLNYKRTLYIEVAYTSCLANSLNIFISKTLVPSSGVLFTRPFIDRKLYYNSSLSLDKSIDPTSIGL
Ga0307515_1000103428F038927GGAMKALPKQRFKSFVNIIGMVDIKERLNEEKQLEDLREKVRARRKDLDEITVQLTHGRTREG
Ga0307515_1000103429F088008GAGVLSHLIIKGSFSYNVITLNSLLIKIASFTICNRANNLAFILDVITVLYLFAL
Ga0307515_1000103432F054477N/AVSISLGVRANKLNSPGINWRYRLSVGIGLFFRFNIVANKEYYLTIIGSLEV
Ga0307515_1000103433F015182GGCGGVTKVISNFFKEILLVFSIVLGKGSSVLLEFNIELVK
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