NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307515_10001634

Scaffold Ga0307515_10001634


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10001634 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49796
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (38.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004778Metagenome423Y
F046750Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000163431F046750N/AMQREPKAANDLPASTLHHAEVIPWFIYIKFHHQANTHAKYDGGFHNSIIDDKDGHIPSPLIMFTCTALRHALLEWQWNKGVHPKASKPNLKVDRPDRSIYFNYQNDGGKNASCWAATGCMLLTSPSVADMYTVLMNSWITLPESYQQRVFKNTLTTVQCLIQQGENPTPAMVISVEAARVGNAIPLDYFTSTLALEEPEIGSIDPNIPIDNNCTDDELHFRMPGGSGEYLDDGDKRDDCDAIPTARLRRWAATDLERFNLGTSDVSGYEGEHGDDAYADVVEEASQADDGSMQNVEDXGHNRFDLGTSDVDGYEGEDGENMDVAEEDKAL
Ga0307515_100016347F004778AGGLKDVLDHFELTDGRLLGITMDNASSNYSMTRELQSTLEASGIEWPALRNHIPCMGHIIQLAFGAFMSSLSVKGRTKSWEAHERDQQFGENECMDTGKRQILRKEGNARFNKVSAMKPGLAKIIENVRIS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.