NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10004444

Scaffold Ga0307515_10004444


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10004444 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29030
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F003725Metagenome471Y
F019418Metagenome229Y
F032886Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100044442F002555N/AMLGIFKDENGEEGDGVTDALSIMLRLFREESEEASWLI
Ga0307515_100044444F003725N/AMETLINLYKNLTETAKVVQQRIKKYYNAKRSKGPDLKEGDKV
Ga0307515_100044447F032886N/AMELEYLLINSDEDSKGTNWGYPNLNDATEAKTKTAIEQDSVTGIITPLDTASIAL
Ga0307515_100044448F019418N/AMPLKAATITPLTAATTLRSEGDTSIADTDSQQPVTVGQLQAIVNQLTENNITLK

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