NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10005502

Scaffold Ga0307515_10005502


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10005502 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25634
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F005943Metagenome385Y
F054477Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100055024F005943AGGMLWDGGSGYKAYIFEESTRRYAINRKGRGRKEVIYLRVADISCTRGIRKSTRLSYRGPYGGSVIQVNSNFLYRV
Ga0307515_100055025F054477N/AVSVSLGVKAKVNKLNSFRINWRYRLSIDIRLFFRFNIVANKGYRLTIIGSLEV
Ga0307515_100055027F000247AGGVHTYIIYIALNYKRTPRTEVAYTSCFASSLNISINKTPVPGSGVPFTYPSISGKPYYNSGLSLNRSIDLTSTNL
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