NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10006634

Scaffold Ga0307515_10006634


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10006634 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23070
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007161Metagenome356Y
F016500Metagenome246Y
F027375Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100066342F016500N/AMDKLVVKVIKAKEGLDSFYYIRGLLVIDYLYLLRVNLNSFYSYNKPKVFYTFYPKLAFLNINL
Ga0307515_100066343F007161N/AMLYYLINRYKLDRGVVLKLSLKVPLGVLSSLTKEVEHFSFFRKEIVIINAELSLYLNPLILKGRVYPIR
Ga0307515_100066344F027375N/AMIPLNVLNKSYYSKNRSTNSAAIIVIIIAKYPKNFIYLLTITKIVLATSPVLILVRGKPIIKSIINSNIGPYGIGSTNNSLYR
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