NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10007144

Scaffold Ga0307515_10007144


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10007144 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22165
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (63.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022123Metagenome215Y
F079403Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_1000714429F022123GGALNAFESIEGLLNTEVDDLCLPAYFWEQSDTPSPWNLYWTEAAAYGGGLQLDDPVFGNSWTRYWGAHSWFDCEVDTPCRCEGHDCCGTHETEGHAPAAAETARPSAIPLIVVEPPTPTPSEIDQYNWHW
Ga0307515_100071445F079403N/AMGPQNRRDEKHPDAMIKDFRALLDNRQDAMHRVAIYSATREFIKHKSRNKTYIWDEQLHAMELCIYHGNNVQVEGLDAERISQMCRCTGGQSWRGGDRRNDWVWVKQRPGRCYGALNGRLPWQLQRLFKIKLLNDDGAFVEYWLALALTPIPETSGNLDPVSKFVQLRKAPAAVALQVFSVENIVDCGHIIAEIDTSSKKGDRRNERWIFNSHIDLATWNDVYN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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