NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10007689

Scaffold Ga0307515_10007689


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10007689 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21228
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007161Metagenome356Y
F032886Metagenome178Y
F061416Metagenome131Y
F064575Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100076891F064575AGGAMMAPKASSSKRAASTQEEPKIQLGSEIKDNNNVIDIREQIYALIASQEANYLKARNI
Ga0307515_100076892F007161N/AVPYYLINGYKLDRGVVLKLGLKVPLGVPSGSTKEVEHFSFFKKEIVVVNAELSLYLNPPILKGRVYPVK
Ga0307515_100076893F061416AGGAMHFKVAQEGVKLAIPMDRIAYVGLFLLGRALKWFKSYLIEI
Ga0307515_100076894F032886N/AMELEYLLINSNKNSKGTNWGYLKLNNVIEVETKTTTEQGLVTGIITPLDTASIAL
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