NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10010962

Scaffold Ga0307515_10010962


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10010962 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17277
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002793Metagenome529Y
F019418Metagenome229Y
F032886Metagenome178Y
F035639Metagenome171Y
F038017Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100109621F035639N/AMTLEQRINGIGAAKVKLLLIKRFLGERSKLKGFLT
Ga0307515_1001096211F019418N/AMPPKAATTTPLTAATTLRSGGDTSMADTNSQQPVTVG
Ga0307515_100109622F032886N/AMESEYLLINSDKDSKGTNWGYPNLNNATEVETKTATEQGSVTGIITPLDTASIAL
Ga0307515_100109624F038017N/AMRILVPVNKTVTFRLTRQRFKLKDKDELRVDLRHPAHHILAWIACVDDICDMHKNPKEKNRKYPIRMY
Ga0307515_100109628F002793N/AMDIIPLVNDLEMLRIFKDEDRKEGDGVTDALSIIL
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