Scaffold Ga0307515_10019844

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307515_10019844

Scaffold Ga0307515_10019844

Overview

Basic Information
Taxon OID	3300028794 Open in IMG/M
Scaffold ID	Ga0307515_10019844 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12052
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Sclerotiniaceae → Monilinia → Monilinia fructigena	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	46.6992	Long. (^o)	-120.899	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F005943	Metagenome	385	Y
F032490	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307515_100198441	F000247	AGG	VYTYTIYIALNCKRTPRIEVAYTSCLTSSLNIVIGKTLVPSSSVLFTRPFIDKKLYYNSSLFLNKSIDLTSTSL
Ga0307515_100198442	F032490	N/A	MLNLKNNLIPISKLQHQLVLEGFNLLALALTPKGKPSGLKDYDDYKGDINNVLSFINYITTDK
Ga0307515_100198443	F005943	GAGG	MSRNAGNGYKAYVFGESIRRYAIDRKGRGRKEVIYPRVADISCTRGVRESTGFSYGGPCGRVP

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