Basic Information | |
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Taxon OID | 3300028794 Open in IMG/M |
Scaffold ID | Ga0307515_10065548 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5051 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 46.6992 | Long. (o) | -120.899 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004891 | Metagenome / Metatranscriptome | 419 | Y |
F006048 | Metagenome | 382 | Y |
F010438 | Metagenome | 303 | Y |
F047400 | Metagenome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307515_100655481 | F047400 | GGA | MNTFVHLPLHESMVQRSAGKHDQWRGYMTVLVVIHGIIKSISILTAVIRPMIEYDVDKPRDCFRQEVKWTLAIR |
Ga0307515_100655482 | F006048 | AGGA | MLKQRPMLDITRSNQYQVRAQVDKVKSHFIQSARDNIAELYDLHRFESAAERLEFIDSLLADNKYLFPVAEHVEGGVHGPNPTKRESKAANEWPASTLLPGGSNPGVYLHHILSSGE |
Ga0307515_100655483 | F010438 | N/A | MTGLVFATGRLLELYMWNRRPFMSASDLGMVSYATRRVAKALAEGPNWQIIEKYWNTAMQQNNIWSVAFEARTKKILKEVC |
Ga0307515_100655484 | F004891 | GGA | MIARASGFGMGVDRFSRLLRGVGVLAMMDAGLDTTRRVESVCIVPLGAGVLRLLVPGVAVGVIIDRRCVADGVEVTR |
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