NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307287_10046608

Scaffold Ga0307287_10046608


Overview

Basic Information
Taxon OID3300028796 Open in IMG/M
Scaffold IDGa0307287_10046608 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1584
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000938Metagenome827Y
F015967Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0307287_100466084F000938AGGAGVTRRPIWLIDLGDGTWAVSCMACRIALYRGPKAGADRAARGHSCEPVLPLGRRRRPA
Ga0307287_100466085F015967AGGAGVTYRTRHPGAAPPPGWGQAPGWSPLVDDGPAPLQAARSVGRWLWPTLAVGGFLAVAGFVLVHDDPVPGLSGRGLLTIALAAAVVVLLTIRRTAGPRPLARALFEYAVVFLLAVLVATTGVDLDQTPTGGKRASTLPDQRPALVKSIDSFRDWLGEWRAWARTETNRRTRPPSTTTPEPTGDAMVLPSPAMSPSTRRPL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.