NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265301_10000500

Scaffold Ga0265301_10000500


Overview

Basic Information
Taxon OID3300028797 Open in IMG/M
Scaffold IDGa0265301_10000500 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57168
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (86.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y
F076729Metagenome / Metatranscriptome117Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265301_1000050025F012184AGGAGGMTNAEILSTILNIPGAVMCRVNKTNFIVVPTEDGYAKIAVGTALAKDTKTHKAFNFEAAKEAYKAYEAEVALREAEKANKPAKVKGPNPEAEARRQALDAQIAGLPAFTDLTAQDILNALAGQVAENVTVMAVGSSAMRLVEQGALTMEVRKDEKNPKGKKYYTKG
Ga0265301_1000050056F065312AGGAGGMGKKKKQKPKTWVEVFQSERKTFPQGYCVSRVIEDKRNKPPKHKKGWEEE
Ga0265301_1000050061F086398AGGGGGMAEMTYHVSVDRAERVKNIVEKIGMGQIIKEKYIGYGIGGPAGRYVCITDTGVTIIKDEKKEKIITMYVTTQKELVQVYGGTKKIPPFLRKKVDYNQSKFTEDGKTIW
Ga0265301_1000050063F087968AGAAGGMVKVTKALAKKLYDEGEAVMVIPNRIRPTSQLAHWTTKPANDPNADFEKLCNAIFYYNCSPETGMKLAYYVKEV
Ga0265301_1000050099F076729N/AMNLTDNEVLKFMKGGPVFLDDICAVYSVKLGEIVDVGYEKF
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