NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265301_10020497

Scaffold Ga0265301_10020497


Overview

Basic Information
Taxon OID3300028797 Open in IMG/M
Scaffold IDGa0265301_10020497 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5456
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013263Metagenome272Y
F088017Metagenome109Y
F096242Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0265301_100204974F013263N/AMKTDNLKELRELRNQEKAIKARIDEISTEATNEAVAILAEKGLEKGEFEVESVGKFQLQRTEVFDFADYHKYQQEQAVKWRENAREKVKEQNLVKARTAVMAGYVKTFVELYPDKEPDEVKLTVKVVE
Ga0265301_100204975F088017N/AMKTSFEIIWEFLAPAEQFLNRREACERLWKGLTLKKQRQIYATFVWQREQRIEIEENPYFAISHCNPRPFNYNGSNVGLPNDTKLFIAKYSEHYGVYSKLDTEAFEMEDLRAFN
Ga0265301_100204976F096242GAGMLLKLIKTRQYISGSHCEVWEINHETGNRLLGEVFVLNEHLPLELIYRVTVSVRGICIQGRHCGWQWESARLEVAVTEYLKVVQECREEIRIEVCEPEPDLPGYPEVDYHPGDFGEEFTPIIVPLNDDFEE
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