NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265338_10025222

Scaffold Ga0265338_10025222


Overview

Basic Information
Taxon OID3300028800 Open in IMG/M
Scaffold IDGa0265338_10025222 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6044
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015081Metagenome257Y
F071728Metagenome / Metatranscriptome122Y
F087101Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265338_100252221F071728GGAGGMNKPDRADVRQVDLNVNGITFESVRLRRRCGLADFDVLIDDPNLGRFAPTPAFPNLELRDEDSDWRRVSLDELKKILADDGELAELAEEPQASETAERESFNRLVAEGEYIMN
Ga0265338_100252222F015081AGGVHPYYSGDKEIGFEDLIQEQRSLARSKNPFERVVGSLCIGAILKEQLVRLPNSTISQLMTDNIWCQLNLLAPESVIVEIASERLVEKREASLVCPECGSEFWRADE
Ga0265338_100252224F087101GGAGGMADRKRISASGDMPLRVTGEAVMYLSSLSQFHGIPDSALIHLAERRTRMYVPDRWVAIALILSNRIPIPVPTLHGQVQGNSSEDPALAKLEVIIGGRVPR
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