NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307305_10176580

Scaffold Ga0307305_10176580


Overview

Basic Information
Taxon OID3300028807 Open in IMG/M
Scaffold IDGa0307305_10176580 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)984
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016712Metagenome245Y
F062729Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0307305_101765801F062729AGGAGGMSRLTPVLFGAQLLIMGANAMAAQVSGYDENALRVESRQGNLQILRGIEGTVVARAGIFHPPKVANLVIQSDSALAEAKIFERDYEPGQWVAALGIATLGAAIGASRISDINPVIQVSLYAISFAALGYGGNRLHSAYGAL
Ga0307305_101765802F016712N/ADMKEPWTRGDPEIEVHIQGPRDATSPTSGIDLSCSGEHANQYAKVFNQDNGFWEGRVLLFSRDETNAFIAKFSQGFHVLFWEDDNDPCVLKLDSNTLVGVLTSTATAVSTVAIKVLPGATPNIIAAVFLGSFFASAGDWLLTNDDFVGAAVDQATAGYYYPGNTHVIMDGTTLNGRATIVYRP
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