NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307302_10061202

Scaffold Ga0307302_10061202


Overview

Basic Information
Taxon OID3300028814 Open in IMG/M
Scaffold IDGa0307302_10061202 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1760
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026500Metagenome197Y
F031020Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0307302_100612021F031020N/AMDERGGPEPVEPQPESGQDRGPSALMVAYASALEAGDAGLAAGLYAGNALLTSADESLTGRSGITGWHEDLLARGGVRAVPASTGNDTGRLEVDGPTGRQVVELAFDASGRIGTARWLTPAEADLPQEERERTAT
Ga0307302_100612022F026500GGAMTESFDGDAVRYEGDRPVAVGDLRLAQPTRMATTSAGFWGLYEAGDEVLVVHPAGALRGPPGQVRARLAELAADEGRGDADREAASSFLPFLGGDDPGAATDVPRSRVEEGPPPTYTLSDERNAPPAP
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