NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307296_10649100

Scaffold Ga0307296_10649100


Overview

Basic Information
Taxon OID3300028819 Open in IMG/M
Scaffold IDGa0307296_10649100 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015020Metagenome / Metatranscriptome258Y
F069799Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307296_106491001F015020AGGAMAGSRPWPFEDDDRPSGSVRPLSQSELQAILAHLTSDPDELLAGTDAEQPVVAVRVRASVGQPGGSAQATWRRLRAAEWTAWTR
Ga0307296_106491002F069799N/APVPESTRGRRAWRHAAVQIEDYRRTYHITNPDRALGAEPNNLTQRADRQRADSAIKQVQTKQRGADRSHDTQPTSEPANQPRPRTQRGRHGPERAAG

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