Basic Information | |
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Taxon OID | 3300028828 Open in IMG/M |
Scaffold ID | Ga0307312_10768178 Open in IMG/M |
Source Dataset Name | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 638 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Colorado | |||||||
Coordinates | Lat. (o) | 38.9206 | Long. (o) | -106.9489 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000280 | Metagenome / Metatranscriptome | 1383 | Y |
F007262 | Metagenome / Metatranscriptome | 354 | Y |
F090360 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307312_107681781 | F000280 | GAGG | MPARPLAGYRDVGPDVRHSRRNHMRAWIILAFLVAIYLGWTLTVYFLEPGLR |
Ga0307312_107681782 | F090360 | N/A | MAAAPPFVSYSTMSEATVPASEWSYLYGSLQAYKAHVQEYPGCQKMELFAAIDDDGAMRVHCYTVWDTPEQLEVFLEIGYTFERLLADLELQGVERSLVMEKLF |
Ga0307312_107681783 | F007262 | N/A | TWSGFTSELAGPSTLFFLLLTVILTGFAVALIIGHIVNGQIF |
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