NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0265298_10001774

Scaffold Ga0265298_10001774


Overview

Basic Information
Taxon OID3300028832 Open in IMG/M
Scaffold IDGa0265298_10001774 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31548
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (87.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y
F086398Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265298_1000177427F086398AGGAGMKEQMTYHVSVQRADRVKHIIEDIGLGQIVKEKYTRFSLEQAGRWVCITDTGITIVKDEAKEKVITMYVTTQRELVAVFGGTKKVPIFLKKKVAHNESKYTERGKTIWK
Ga0265298_1000177428F065312AGGAGMSRRKNKTKTWVEVFQAERKAFPQGYCVTRIIPDKRHKKEKYKLKGWEE
Ga0265298_1000177433F012184AGGAGMNKNEILNTILGIPGASMARQNKTNFVVIPADDGIVKVAVSAALATDTKAHKAFNIEAAVAEYKAWEAESALREAEKANKPVKVKGPNPEAQARRDELDAVISAMPSFTDCTATDILNAIEGKVAFTLTPMNVGQSAKRLVEKGVLAVATKDGDKKSYYTKA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.