NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247610_10000045

Scaffold Ga0247610_10000045


Overview

Basic Information
Taxon OID3300028833 Open in IMG/M
Scaffold IDGa0247610_10000045 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)188358
Total Scaffold Genes368 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)248 (67.39%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F017772Metagenome / Metatranscriptome238Y
F072829Metagenome / Metatranscriptome121Y
F086398Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247610_10000045226F086398AGGAGMEMTYHVAVQRADRVKHIMEEIGLGQIIKEKYTRFNLDQAGRWVCLTDTGVTIIKSEDKQKIITMYVTTQRELVLVYGGAKNVPAFLRKKVDKNQSKYTQAGKTIWR
Ga0247610_10000045254F012184AGGAGMNINEVKNVIMSIEGATMARQNKTNFIVIPTDEGCVKIAVQTAQSKDTKTHNAFNMEAAVAEYKAWAAAGALRAAERAAKPKTVKGPNPEAQARRDELDAKIAALPAFTEYTATDIFNALAGQLPENVLVMQIGSAAKRLVKAGVLVPSTKENDKKTYYTKA
Ga0247610_100000453F017772GGAGGMNEPRLKILPPWTILVRKLEALFDGDPQIAFNVDFSGEHPSVILSCNNGDKVAALMQILPEEVNFGNVTLKVMVDGTPSNRAFKSKVELFDTAFAKNPAYAYSVCPAEEGYQWIGTTYVVFNNCVVQFAADNLNDCHGVISTLYETIASELLTGPATEGVFFNTNVERAGLGMPLGE
Ga0247610_1000004569F072829GGAGGMENFYDKLIDEYFKRHPDAGLAWWMLPLEEQPEGFKQEMYDIMWDLTHKENE
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