NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247610_10160358

Scaffold Ga0247610_10160358


Overview

Basic Information
Taxon OID3300028833 Open in IMG/M
Scaffold IDGa0247610_10160358 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2292
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0247610_101603583F012184AGGAGMTINELKNVIMSVEGAQNARNNKTNFIVVPCEDGVAKVAVQVALAKDTKNHTAFNLEAAVAEYKAWEAETALKAAERAAKPKAPKGPNPEAQARRDELDAKIMALPSFTEYTATDIRKALGTTVPDNVLVMQVGSAAKRLVEKGVLVASTREGDKKSYYTKA
Ga0247610_101603587F065312GGAMSKKKTPKEKTWTEVFQAERKTFPQGYCVTRIIPDKRKKEPKHKGKEWDE
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Institute for Fundamental Biomedical Research
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