NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302265_1050063

Scaffold Ga0302265_1050063


Overview

Basic Information
Taxon OID3300028859 Open in IMG/M
Scaffold IDGa0302265_1050063 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1442
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0302265_10500631F014350N/AARHSIEHTENPNRAHESRTESEAKSMATQVNPLEEHAAGAKAGRRVSKAKEQQVEQTAPADTDFPYAGQEASPQQELDTLDKQADAPVRGSYLREKDGYDALSPEQKAACDKDFNSYLDRFTSPLEAKVGETREDAILRAKKEYCVARQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVSKEFLATAFYHNAAAAKGLTAFEKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER
Ga0302265_10500632F004581GGAGGMQHAEIYNGHARRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLLNSVYGYPAGKQAVLAMSAGLLPGEERSQTVRGLFRMTAACSEYDQTLSYTLLPLPGREIETANLLKAT
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