Scaffold Ga0302263_10032258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0302263_10032258

Scaffold Ga0302263_10032258

Overview

Basic Information
Taxon OID	3300028869 Open in IMG/M
Scaffold ID	Ga0302263_10032258 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2053
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0469	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085037	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302263_100322582	F085037	GGCGG	MVALLALVFAIDAGPVVPPAATVASAPLRDAKLILADYTRAIGDEKAWKRHKSLRVKREVSVKAMNFTSQEETRVARGGKVFSISKMPGMGTFRRGCDGRTAWAEDPIGGLRVLKDAEAEDVRIGAAWNSEWHLADTYAKVESITPPKTAPADKSLECIRLNKKQGAPTQLCFDSATHLRVWEQGVQASQGGQVPYVTTFSDWRPVDGVQVWHHETVTVGPVTMEGQIVEIVFDEPAPANLFALPRKK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.