NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302197_10063059

Scaffold Ga0302197_10063059


Overview

Basic Information
Taxon OID3300028873 Open in IMG/M
Scaffold IDGa0302197_10063059 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1995
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → Holophagales → Holophagaceae → Geothrix → unclassified Geothrix → Geothrix sp. SG200(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064322Metagenome / Metatranscriptome128N
F077902Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0302197_100630592F077902GAGGVKRITRREFNRGVGAVLKTLREARGVSQEELGEALRQNASNKTPEQEDQQLRTVAAICTVVSNMRKEQGLTPEQLAKRSHVPVKFVRNLEAANDLNPDAYFLFCLTQGFGISFHKFWHQVEALVGIPEAELLRDDDEDDCVEGEP
Ga0302197_100630593F064322GAGGMSRNDKEGMSKRREKTIRLNRFGNTLNYDGANGKTVKNISVSHGDHTLYVYIAFTDDTEAAVHFNTVPVADVILCGDVHGDLEPIARSGPTVLPELGYIHWDQIQQPPKQAKLKKRGRKVSPIAIDLAR
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