NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307277_10022790

Scaffold Ga0307277_10022790


Overview

Basic Information
Taxon OID3300028881 Open in IMG/M
Scaffold IDGa0307277_10022790 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2459
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012702Metagenome / Metatranscriptome278Y
F019011Metagenome / Metatranscriptome232N
F047347Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0307277_100227903F012702N/AMMKWKEQLNGDCPKRDAHGLHERCDLICPDLPKVLLKNSSA
Ga0307277_100227904F047347GAGMRWVLDPECPVVAEFMETLFGDPTMAMGAPVEEITEEFERRHRKQCKRCQRYAIRQRATE
Ga0307277_100227905F019011GAGGMPKRSLLLLLAAMLACPLPAYADTVTIGYFDPAAGMSGIQVLGTASGTSPMVQLLGHPILPTGVTGFGFDQILAMVIPPGGNSLSGGLGGPNPTFEFTFNDGFAPPQGGVSYLYATWEGTLEGNPFTLPTRWGTIETPPSNPGYTVTTQVLVCNTPNPFCGPFVGGIAPNGFAGQDAFSNGLRIDDMTLSAILPSPSFKITEVFVFQGGPHPPFAQGDVGGLIEMTLFDPPPVPAPIAGAGLPGLILASAGLLGWWRRRKKIA
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