NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265299_10129578

Scaffold Ga0265299_10129578


Overview

Basic Information
Taxon OID3300028887 Open in IMG/M
Scaffold IDGa0265299_10129578 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2112
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018657Metagenome / Metatranscriptome233N

Sequences

Protein IDFamilyRBSSequence
Ga0265299_101295782F018657N/AMKSSKKEEEKIDPVQDFNENCKKHLNPKEQHIWLCYDCRKFTCTKCYAKDHKQDWADLIENMYDEMKNTNEANQKAIKGMRDEFAEEVKFMEEKYEYFLANNPFDMNIKLVNKIYDNIEELINKRREDTLQRMNLLKENYEKNITQNIEKIKDMIKKSDDIDRRITAELKKMKGQQPFEFCRDLLDTNVSSDLADECNDVNIFQKQEFTRIKQSFIDTNTIVFNDSNALIDQCKTFREYITEKINNFYQNYTKYQSKYAFTVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGETDEGFSAKVYHKSDMIYKRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIFNDKWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDYNNEDKGWELLELKSTEKDCEEVDIKKNRMGVITLDFDRMLIFGGERNNKEYKEAYIYEFYEKKFYQFADLVRTSNFIMSPVYSQGKYIIFDFLNNIHELNLETLQFEYHVFHKEGENVNL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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