NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247827_10134548

Scaffold Ga0247827_10134548


Overview

Basic Information
Taxon OID3300028889 Open in IMG/M
Scaffold IDGa0247827_10134548 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1291
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032713Metagenome / Metatranscriptome179Y
F053868Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0247827_101345481F032713GAGMTTASLPTRLADSIKELLPWAHGHQRKAITTFVAAIIDQQTGCQAALARTQGNQAAAVKRLSRLLHNERLKPKDFAEWLCRQALRQVPGTGRVRFTIDWTSEDHQHLLVVYLVVGRRALPIFWRAYEQTVLKGRMKRYELAVIKRAFTLIFHYIAPPRVRLTADRGFADTALFALLDT
Ga0247827_101345482F053868GGAGVELHGQWCKLNTLRFAGNARRRNLGRIQYCESSPQRLWITLSRARDKKGHWGIWYLVSNRPLRAQPMALEYGHRFCCEEGFRDAKWYLGFAQARIKAIQAWARLFALFAIALLVLTSVGMRLLLRPGPQARRLLRRVASRRRDRCALSLIAAVIALLQQDWSLFAALSTRIKFNLEATLSNMS
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