Scaffold Ga0247827_10574404

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0247827_10574404

Scaffold Ga0247827_10574404

Overview

Basic Information
Taxon OID	3300028889 Open in IMG/M
Scaffold ID	Ga0247827_10574404 Open in IMG/M
Source Dataset Name	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	717
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.673	Long. (^o)	-77.032	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086788	Metagenome	110	N
F103944	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247827_105744041	F086788	GGAG	MTLKRWVLGKTGGRKPNARADARSHVTPSFTGEPVAGNDVREPTVGAAAHRDALRGGVAHLGPYAPLIGAIRDELERFVSDELRLHLAIAERDRYVLTSIDVDCEDSDEHRELLRKFVGEFKPEQIKHYLAREVIAGLRNASAVDLGQFAGLNASAREDDAANESDEG
Ga0247827_105744042	F103944	N/A	VGDVASIAVLVELSLPALKRRVAAGDTIQPAWGMFLERLGSRYGLPAAPRVRYAPGAGPLATLVVAYRSLE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.