NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000026

Scaffold Ga0308309_10000026


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000026 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148377
Total Scaffold Genes134 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)99 (73.88%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F000260Metagenome / Metatranscriptome1431Y
F000359Metagenome / Metatranscriptome1236Y
F001885Metagenome / Metatranscriptome622Y
F073828Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_10000026112F000260GAGGMNWKSKLVLGMLTALAMMLLTYALPRGGTLRDAALVQFPVTVGIWAIFVLLFVKLK
Ga0308309_10000026119F073828N/AMNRKTRLRILLAFLVAAVLLLAGAACKKKEAPEEVLPMDRVAPSPVGESQPILHKTFTVSASVNFPFEVPAHAAMPRLHGNYKSFVKQLGVQSNDDTANVDFLILNEDQYADFVQGHTGEALFSADASHDQDVNVSLPTSQNLPQKYYLVFRNPPGGESKKVVQADFTLDF
Ga0308309_100000264F001885AGAAGMSQEFLSLAIWQPLPGMEAASLASIRELNAIVLKKGYGRDLLYRGSDSHYMLLRYWNSEQARGTAQEDPELLRCWARLGNEIQILKVYEKLEEVGV
Ga0308309_1000002657F000359GGGGGMSGQVILYFEDQADALRFALAAGSVMAGDGTRATEDLVQETGRVSRIRLDAANAGKMKKPTPERAA
Ga0308309_1000002673F000238AGGMPTPHPPRWYAIPVRVLLVTFIGTLITFAVSLLAGIIGTVAVSALRHVHPNMTVAYRQIAVPAAAVAGSIIFVLALAMEIRHYRQSRTLAAIERMS
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Biomedical Sciences Research Center "Alexander Fleming"
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