NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000027

Scaffold Ga0308309_10000027


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000027 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145679
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (78.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000410Metagenome / Metatranscriptome1170Y
F001589Metagenome / Metatranscriptome667Y
F011955Metagenome / Metatranscriptome285Y
F023438Metagenome / Metatranscriptome210Y
F026629Metagenome197Y
F043510Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_1000002729F026629N/AMKILLVHFEDDPGKGPWASVRWDHVVDLGLGGKNSYARWIRQLRCPVTSLDSLRNGFDDFRRVRDMLGVGCGRLIDEHGLDWWEIMSILLHGELETLLLLQRFLRTVSAGDEVYVSRPGLHASLLQCLLRARVSVFPLRRGAQKGGLGHYVRVSNKLSAPQMIDVFWDKYDAGYQFRGRLARKRQPSTRPVVLLPTAYVNVSRTGIAYANTFPEEDFLLVTTRQSGWIQDPPRNVAAAWLSSYASVRDRRGEIADLENRWRSLLDELGGVAEFEILNRLGYMDSFPRRFRHGLEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLLLARARELPNIACHHGALDGRYVFKRTYGDVIWAKGKMEEDYLVRSCGVPGERVEIGAPALPVNWNGVEPSNRQTFRPNLLFISEAFDVSGGRPEEFYRDILPPLADLALATGRKLIVKLHPAESERERASILSRILSAEQRSATEIVSGPLTEDLLASAWFGITILSTVAMECAIRGIPCFLCKWLESRSYGYVEQFIRFGVGIGLNDPGEIEKIPQYLEQRAVSAEVSENCWQAAGAGRLRELLTTSHGTCTTATG
Ga0308309_1000002735F043510N/AMSESREVRLPADLCAAVEDKFGGTFRGMDELVVFLLQELIRGDTLDLDRADQAVVEQRLRDLGYM
Ga0308309_1000002747F011955GAGGMTTPGVSPPERTPRADLVAIGEKDLADLACFIAAQSGRTSGTVEAHLRWFLLENPARRPQDPLGFGLRSAGQFVGCILCSPQAFRFEKEKILLMGSSLFYVDDRYRGYGGRIFLQYCRLGTQWPLFGTSANAEAAALWKAAGASPISGSDGELFGVLRWPPVVEEFVHRRNPSHVLSRLAGSPISNLAGLLRRLKIDTGTSEVLQSLTSAEQVNDLPLHQSSARLTAMRDLPYIRWRYFSGRDATVAVFAFRSGRPNQEILVTVNQRTRGYRGQINTLNVLDVYPEVAPDEWVRIVGALIARYKAIVDAVVLRCQSPARQKVFCEGGFQRRIFDAPNGWFLDKAKLLPTHDWYPVPADGDGLI
Ga0308309_1000002764F001589GAGMRPPSIFVLCVVSLLLLSSCSPRDFLTHRLAADLIAGSNTFRAQQPFQLRTGVVSNKDYLSADYLVLQHRGWISAANAACPPALAPPPCWDVTLTPSGVDTFQSLIAPGDAEKQSFTIPAARRELVAITGIAKQGNAADVEFTWRWIPLNEVGAVLYTADLRYRSIARFRDYDNGWRLVEGAAHPGQPLDESLRNAEPEQ
Ga0308309_1000002780F000410GGAGGMAMSRRLVWIEQPQFRGFGCSECAWVFNPSGAPSGKTFDEMMRNFELQRDKAFRLHVCADHPRAKGTSGKPRE
Ga0308309_1000002790F023438N/AMLNNGRVNPEELTLRHILSVRCPMCRAKPKEQCTLSTGHPSAKTHLARGLAAASAPRPENSGRAALRILKAMTTRGLHALFQHK
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