NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000050

Scaffold Ga0308309_10000050


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000050 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112965
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (75.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003988Metagenome / Metatranscriptome458Y
F022474Metagenome / Metatranscriptome214Y
F029822Metagenome / Metatranscriptome187Y
F078993Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_1000005019F029822AGGAGGVKTTLFAVALVVALSLSAMAQHSRPAMSQHRAGSATGTTVFKNSAHPQVPALCNPCLFYAGDLNPFDPNAAGMSDENTLLITEGGGATYAAVIIPTGVTATVSGIVFNVQADAAFDPMTASYDVRTGITDGNGGTSIASGSGSIAVQATGRNFLGLSEYSLAVSLSAPLTLTPGEYWFNLQPQCLNTLDGSCSVFRQFVSNTTQQTNRLNGWWQPAHEMFLNGAFYGITFTNWCDSELGFNPYQCAGMSFGLIGTE
Ga0308309_1000005020F022474AGGAGGVKTTLFAATLVVALTLSAAAQKKPAVSRHLAGSDHQAAGWTGTAVPPALCNPCLFYGGDINTADFNAAGMSEENTLLIPNSATYGNFNVPSGSTVTITGMLVNIQASANFDPVTATYDIRSGVTEGDGGTDIATNTVTATVAATGRNFIGLNEYTVAVNLSTPVVLGPGAYWVAVTPTCTNGGLDGSCFEGRFFVSNTTTKANNVHGGQESEHQMYLNAAFFGLTFANWCDADVADFNQAQCNSLSFGLMGSSSN
Ga0308309_1000005053F078993GGAVQLTGGTTAEQAVHQRSTAQFTVATEENLKKIAGRQLTPSQQEMVSQIKQFMAQSKTAVAAGDLERGHDLALKAHLLSDELVKP
Ga0308309_1000005094F003988AGGMKFSCTRCAHHVSTLDFDARDGNLRTQAATAINLHATTVHHEPVMFSSLDTQQRIWR
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