Basic Information | |
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Taxon OID | 3300028906 Open in IMG/M |
Scaffold ID | Ga0308309_10000592 Open in IMG/M |
Source Dataset Name | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22786 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (69.23%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007233 | Metagenome / Metatranscriptome | 355 | Y |
F007429 | Metagenome / Metatranscriptome | 351 | Y |
F033134 | Metagenome | 178 | Y |
F037842 | Metagenome / Metatranscriptome | 167 | N |
F044617 | Metagenome / Metatranscriptome | 154 | N |
F065986 | Metagenome | 127 | N |
Protein ID | Family | RBS | Sequence |
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Ga0308309_1000059216 | F044617 | AGGA | MNTSPKESRQMPTITAMTAEERRKLDERIRDKHQKLRNKYPEIYGKVVDWIHHSVEDGTLYICIRFQDKTDFALEFSPQIVRVGTELCNSATGDFDVIRNYYKEERE |
Ga0308309_1000059217 | F065986 | GGA | MSNIAKRQGRMIRKGKEVRFGSVHIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCAKISPSLKRFRLISIRTQNRLKG |
Ga0308309_1000059219 | F037842 | AGGAGG | LKQKTVKAKGEGVEYPALSGKVTRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKTRPILRRVARK |
Ga0308309_1000059220 | F033134 | AGGA | MEQEHESKQLITFNSLHIEVLGPRALGNSQPAIRGVTEFLHAAELDVRNLLRERAETSPILEGFRLRFG |
Ga0308309_1000059221 | F007233 | GGAG | MANRKQKEHQRHLNLDTFSEGIKGKVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD |
Ga0308309_100005928 | F007429 | AGG | VDAVFYPVALNVIPMKKKQKPAKKRRPAIKPTAQNERLKGWNEIASFLGQPVAVAQRWARSGMPVTREGRFMYASREELSGYLGREAGLNVPVHIVTENMDLSADLKLALAHARAGKHNKKKKAKR |
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