NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302200_10045369

Scaffold Ga0302200_10045369


Overview

Basic Information
Taxon OID3300028909 Open in IMG/M
Scaffold IDGa0302200_10045369 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2596
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019749Metagenome228Y
F072969Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0302200_100453691F019749GGTGGMHAQEGAQGERGSANDYRADHAPKKRGDLTATLNPLLEPRLSPGQPGRRRGVSNYEWTPETDRLLVELCAKWGAAKAKHIIGRRLQEGLLSDAAPKPDSVRKSVEYRMAKLGIATGRKRRKPDGRRPKRWTESQTAALLGALGADATIESIAARTRHTVKSVRAKIARLDYRVHEIHGFTVFTANTLAALLGVTPRQVRRWKDQGWLETQDRRITEKCLGDFLRAHPDRIPFDSLRREDQFYLVDLGFPCPEATTFKKNVRDILDGIGRQRKPRRPPRSGNPTAMDARYGEEKLDGDDGATFVVGTSG
Ga0302200_100453693F072969AGGAGMGETPPRGIPTRRVEKRLIKMLGEAVRANCPNPERIGCPGPDAVEAVVGRRLEFPRFDDAVDHIATCAPCFAEYNRKRQRSRILKAGAVILGCAGLVLIGLAWEHRPANHTYPKEPVAKEASAPAVTATLDYRNWTTERSEQSRPRPTEPPHLTRGQLDLTIKLPIGTEDGVFSVEFRTSTNESVAEATGTATWDGTAEAL
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Biomedical Sciences Research Center "Alexander Fleming"
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