Scaffold Ga0272441_10029901

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272441_10029901

Scaffold Ga0272441_10029901

Overview

Basic Information
Taxon OID	3300028920 Open in IMG/M
Scaffold ID	Ga0272441_10029901 Open in IMG/M
Source Dataset Name	Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Prop-6N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6712
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location
Location Name	USA: Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.5758	Long. (^o)	-70.6394	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068995	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272441_100299018	F068995	AGGAG	MAKKKSEKGYIKAVHKARPDWEYYLPVENKKLIAKLATKPIFPKTCERPCTKVITLFPEDTVNGHCGKGYHMINIDGYRIINAYVISDALNSTTQRGFTLELSFSLNDFVYGVGVIGETSHFFNFDSYFNPGNSSHRTLRCETNDLTTTGGLPWIGGTDLTHILRVPVMGPYVRASAFNEGNTPRKVEVKAYLST

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