NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272441_10988703

Scaffold Ga0272441_10988703


Overview

Basic Information
Taxon OID3300028920 Open in IMG/M
Scaffold IDGa0272441_10988703 Open in IMG/M
Source Dataset NameMarine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Prop-6N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location
Location NameUSA: Falmouth, Massachusetts
CoordinatesLat. (o)41.5758Long. (o)-70.6394Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092306Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272441_109887031F092306GGAGGMTMPATFYQSPNWEQSSEPFLPVEVQEGDCWPVDVRSESTTKDQLDDGLHPIVAVGGIAESGRGSALTGVVVSVNLSALGTATDRVVLNIADGAIVRQYVSNILTYAGEAPATFEQTPVVGQPVYVDDSADLSEGVTVSMSPLNHAGLANPLAGYLWYCQDEIADGQVGGARATATFDTALANEAVEQIYCVLLAGAV

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