NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169598_100387

Scaffold Ga0169598_100387


Overview

Basic Information
Taxon OID3300029013 Open in IMG/M
Scaffold IDGa0169598_100387 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from infant at 12 months in Denmark - 26_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45579
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (20.97%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location NameDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055775Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0169598_10038751F055775N/AMAQIAQQDNLVIEVTTTAAALDDVTKKKLIECIEGGTITDVILVTKEAEKEISHARVVGWLVVTTGNSPKYTIDIINANSGMVTVIELN
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