NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169593_100138

Scaffold Ga0169593_100138


Overview

Basic Information
Taxon OID3300029018 Open in IMG/M
Scaffold IDGa0169593_100138 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from mother in Denmark - 256_M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63947
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (86.36%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location NameDenmark
CoordinatesLat. (o)55.676097Long. (o)12.568337Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081453Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0169593_10013851F081453N/AMSPFFLLAGDNIIEKHISANPVCRTNIRAPELAVKGALGRKCVQ

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