NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169684_100403

Scaffold Ga0169684_100403


Overview

Basic Information
Taxon OID3300029041 Open in IMG/M
Scaffold IDGa0169684_100403 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from infant at 12 months in Denmark - 385_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35408
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (92.75%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location NameDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067720Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0169684_10040313F067720AGGAGGMASTTYHHLGDVTGMYAAQEQFRGLTKMVTKCHRFASIGNMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
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