NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169613_100429

Scaffold Ga0169613_100429


Overview

Basic Information
Taxon OID3300029043 Open in IMG/M
Scaffold IDGa0169613_100429 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from mother in Denmark - 26_M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29288
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (72.41%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location NameDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043945Metagenome155N
F091068Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0169613_10042920F091068AGGAGGMNEKNQHVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVMRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDDLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0169613_10042922F043945AGGAGMKHNLRMAFLSLLLVLTLGVMPAFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLSGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVNTGKGEMMEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE
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