Scaffold Ga0169611

Basic Information
Taxon OID	3300029058 Open in IMG/M
Scaffold ID	Ga0169611_100277 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from mother in Denmark - 268_M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029058 Open in IMG/M

Scaffold ID

Ga0169611_100277 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from mother in Denmark - 268_M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63329
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (35.09%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

63329

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (35.09%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location Name	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Denmark

Coordinates

Lat. (^o)

55.678

Long. (^o)

12.531

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F089590	Metagenome	109	N
F106193	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0169611_10027712	F050794	N/A	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVDVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMREAEKLELDTDAIKAMMRDLLNELKDDIDLNILIFDVSLLLIKYNLFRLEAITEQEFKGSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN
Ga0169611_10027715	F077313	N/A	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTRAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKVINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLDYYKTFNPVAYEAYMNATGNTKARALQDAIYGQTSGWMGLATAENSIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNNILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSFNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYLQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0169611_10027726	F064725	N/A	VTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVIKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKVKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKII
Ga0169611_10027743	F106193	N/A	MGCNTCKEKALRAERERIERSMMNRASSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIRDLPYGCPPDEEVQEMRKEILDGRSKYIKP
Ga0169611_10027748	F075481	AGAAGG	MMRLRASLRAIVCLGLSLFLSSCGSRRQVSDTTIDDRLISRIETMINEVIDRRIVEVKTSDLKADIIITDRRFDTDKDIDPATGERPELSRTDTHIVIDRRDSTVVADSIGVNKTKVNIEDVDKRTDIKHKDVDDKKESRWPIAIIFISVLGILVMLFVLLKRLGVIR
Ga0169611_10027749	F089590	N/A	MGNKSMIDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLIVLLANFLVRLIQSARKWKVRRSRKRRFSLSRWFREVRLVGILKEFLLSCFIVMTLCVIYKTLYPIEEQDASVILSVTKYGVYAALVAYVMLLLNTIGDTFPDVYLVKVFKIIFSRVNILKMFGTTKDLPDDVMEDIKKVANDEVKSKS
Ga0169611_10027751	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYNDDYNYVPDPVVSNSFNTFVEFRSIKPGMANVDWGDGIKEQFPMTKVQGQDDYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRKDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLVVSHTMYANDGIPVDKLSRSNKLIYIDLSNVGQRMTKMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELPSCYLDRYIKEFNDLPKLSTLNITPGPSDMWNYFDLNTLPLFEVDKINPSIKTLTIFDDWISGERRTEWNDNNMSGRGLENLTSLSLSHSNGMRMDRIPDYIYEMRGITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDAIYPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169611_100277

Overview

Ecosystem & Geography

Associated Families

Sequences