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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029123 Open in IMG/M |
| Scaffold ID | Ga0168800_100053 Open in IMG/M |
| Source Dataset Name | Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019858-133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 174146 |
| Total Scaffold Genes | 153 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 137 (89.54%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Beijing, Peking Union Medical College | |||||||
| Coordinates | Lat. (o) | 39.911947 | Long. (o) | 116.4156125 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043413 | Metagenome | 156 | N |
| F055739 | Metagenome | 138 | N |
| F068856 | Metagenome | 124 | N |
| F102166 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0168800_100053100 | F043413 | AGGGGG | MTERELREKLQFAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMQVTAECEGQTYALEIEGCGGGDFMSGMFLPDETDSWSDSPFAFDGVLWDGDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDEQYQALLAGGADTLEAYVQNNWRQHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSSYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE |
| Ga0168800_10005361 | F068856 | AGGAG | MKRLTSILLALLMLVGMALAEETPDAALGDWYALNTENEAICLTLREDGTFCYDSREGTWRKTTDGEYWLTFSRTGLLDVMASMVNSQVAEQDMTALLTENGLDVYYGSTAEGVVAHMLRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMQMTYTLDKGERLAFCTIDGLTMLPGAALGNFTEGTSYPMTLEDGKLHTTILMQMTEEETLDFDMTFFQTADGSLYATLRLNDVPDNPTTMFLLIPME |
| Ga0168800_10005366 | F102166 | GAGG | MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTSLALNTLEEMVDYITEIANGESADNVFAMWQADIGAV |
| Ga0168800_10005398 | F055739 | AGGAGG | MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLNRTMRIVITAVLMALMLTAVGMAAARFFSVTDVHPAQDGTEGDYQAHYLALEERHDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHIITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |