Scaffold Ga0168745_127772

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168745_127772

Scaffold Ga0168745_127772

Overview

Basic Information
Taxon OID	3300029128 Open in IMG/M
Scaffold ID	Ga0168745_127772 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012243-142
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	679
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location Name	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089053	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168745_1277722	F089053	N/A	MEGPRLDKFRFGSRNGCVVGGCGPIKGCIRKWIYGFANGQPELSTAEEVNVKNMGAFL

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