Scaffold Ga0167179_1013802

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167179_1013802

Scaffold Ga0167179_1013802

Overview

Basic Information
Taxon OID	3300029252 Open in IMG/M
Scaffold ID	Ga0167179_1013802 Open in IMG/M
Source Dataset Name	Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP26 - Henriksdal-digested 138
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Gothenburg
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1927
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae → Desulfosudis → Desulfosudis oleivorans → Desulfosudis oleivorans Hxd3	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location Name	Sweden
Coordinates	Lat. (^o)	59.310676	Long. (^o)	18.108437	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010068	Metagenome / Metatranscriptome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167179_10138022	F010068	GGAGG	MHIKGIFFVTTKTVIVQGFGEERWNAFMTKLAEKDNFFSKMIMAISLVPVEKLIIFFDEMCKEFFNNDKMAYEIFGRSGAKHVLHEGGMYHSYLLNKDMKNFVEFALPKLWSTYFDGGTITTKYENNIVHIKITGVNVKYIYFEHLLMGYFQQALKVFGKKSVAKKVRGIVQGDNDIYFQFELKDS

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