Scaffold Ga0168097_1035519

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168097_1035519

Scaffold Ga0168097_1035519

Overview

Basic Information
Taxon OID	3300029255 Open in IMG/M
Scaffold ID	Ga0168097_1035519 Open in IMG/M
Source Dataset Name	Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP9 - Uppsala-digested 110
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Gothenburg
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1126
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location Name	Sweden
Coordinates	Lat. (^o)	59.844519	Long. (^o)	17.659844	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033819	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168097_10355192	F033819	GAGG	MEASEAKQSRVTNTAIQSQLVELSVRLTRMEKDIQEIKKTLFESDKKIGDMEKNEAGRNPLIERRLDNLEKRTDKHEDEIDQLVKITQSLANTNKVLTWVAGLAGAGVLSXXXXLRKSYR

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