NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135211_1009797

Scaffold Ga0135211_1009797


Overview

Basic Information
Taxon OID3300029293 Open in IMG/M
Scaffold IDGa0135211_1009797 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SCH2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)883
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001416Metagenome / Metatranscriptome699Y
F059061Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0135211_10097971F059061N/AFPSHDRGGVREVGGFVSDIFGTGIPQLLGVSRPPSVLQQPAVTSTTKIGAQESQGSGSIEAGMGAALPSLLAQARNLIKSPGGQLAIGTGTGLAFSGLGSQQTGMRITRKMKSQARMVLNMTGGNLSAAADMLGIDQNTLVMILLKRFRNDGPVVTKAALRKTKQTIRRLHNMQDVLKSITPTATRRRSPMKRATTTTLIKN
Ga0135211_10097972F001416AGGAGMPLVKKKLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTAGTASADTLMDFTVNNAEFSKNASVSTLVTGEPFGS
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