NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135222_1001986

Scaffold Ga0135222_1001986


Overview

Basic Information
Taxon OID3300029301 Open in IMG/M
Scaffold IDGa0135222_1001986 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRH1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1255
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025285Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0135222_10019862F025285N/AMSSQVGKLNMVNSKLGATMMGQQTTRTIFDTVTASAANATRYDFFQTFNGKTALETNLVQNKLDSSESMVIKSVYIAISPGTNGTLTAQGLMNLNIIVGNQVVLKDFAPNFNAGARGVAFDRLHSAGDNDIVEVRLLTDIIIPPQVNFKCELQLAETTSVADTKITLGLKGYGVIFSAGNTF
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